Species	Tissue	CellType	Marker	Resource
Mouse	Bone marrow	Adult endothelial progenitor cell	Cd34, Kdr, Prom1, Ly6a	24247795, 27186272, 30542473
Mouse	Bone marrow	Alternatively activated macrophage	Mrc1, Arg1, Cd163, Adgre1, Ccl22, Il10, Il13ra1, Itgam	35862735, 24281978, 29245934, 29110715, 30458295
Mouse	Bone marrow	B cell	Ptprc, Cd79a, Cd19, Cd79b, Ebf1, Ms4a1, Spn, Vpreb3, Cd74, Igll1, Ly6d, Vpreb1, Cd24a, Cd40lg, Cd5, Chchd10, Fcrla, Hmgb1, Kit, Myl4, Pax5, Ptma, S100a4	29474909, 35195371, 35643069, 35984760, 34930978, 34893625, 32421753, 35904250, 31439836, 23943443, 6984001, 16543069, 20705088, 14688067, 11857343, 9038709, 8551222, 7511630, 3262642, 29915358
Mouse	Bone marrow	Basophil	Prss34, Mcpt8, Cpa3, Lmo4, Ccl3, Fcer1a, Gata2, Ifitm1, Ly6e, Ms4a2, Srgn, Alox5, Ccl4, Cd53, Cdh1, Cebpa, Etv6, Foxp1, Igfbp7, Il3ra, Mpo, Runx1, Spi1, Stat3, Tent5a	30283141, 35984760, 34930978, 31974159, 32421753, 32669716, 29915358, 26627738, 29466336
Mouse	Bone marrow	Beige adipocyte	Tnfrsf9	32286228
Mouse	Bone marrow	Blastemal cell	Ly6a, Pecam1, Vim	29105393
Mouse	Bone marrow	Brown fat cell	Ucp1	32286228
Mouse	Bone marrow	Chondrocyte	Acan, Col2a1, Sox9, Col11a1, Col9a2, Col9a3, Comp, Fxyd2, Hapln1, Mia, Ppa1	35643069, 34893625
Mouse	Bone marrow	Common lymphoid progenitor	Cd69, Ctsg, Dntt, Flt3, Igll1, Ly6c2, Rag1, Rag2, Tyrobp	30283141, 34930978, 34893625
Mouse	Bone marrow	Common myeloid progenitor	Cd34, Elane, Kit, Ly6a, Mpo, Cd19, Cd3d, Cd3e, Cd3g, Cd4, Cd8a, Cdh1, Fcgr2b, Fcgr3, Itgam, Ly6d, Ly6g, Ly76, Ptprc, Siglech	35195371, 30157427, 34893625, 33919312, 32422235, 26627738, 28584094
Mouse	Bone marrow	Conventional dendritic cell	Cd74	29915358
Mouse	Bone marrow	Dendritic cell	Siglech, Ccr7, Cd74, Cd83, Irf8, Cd86, Itgax, Bst2, Ccl22, Cd209a, Cd80, Cox6a2, Cst3, H2-Ab1, H2-Eb1, MHC class II, Tcf4, Acvrl1, Ass1, Ccl5, Ccr2, Cd40, Cd7, CD8a, Cebpa, Chd3, Ctss, Dnajc7, Ear2, Elf1, Etv6, Foxp1, Fscn1, H2-Aa, Id2, Ifit1, Il4i1, Irf4, Lgals1, Lgals3, Ly6d, Macroh2a1, Napsa, Nfe2, Plac8, Rnase6, S100a4, Sox4, Spi1, Stat3, Zbtb46	29474909, 35195371, 35984760, 34930978, 34893625, 31974159, 35031770, 32421753, 33079726, 35904250, 31439836, 27421479, 29636699, 28720900, 22884511, 10567699, 26627738, 27984734, 29466336
Mouse	Bone marrow	Early lymphoid progenitor	Kit, Ly6a, Cd19, Cd34, Cd3d, Cd3e, Cd3g, Cd4, Cd8a, Dntt, Flt3, Il12a, Itgam, Ly6g, Ly76, Ncf1, Notch1, Ptprc, Satb1	33077975, 27984734, 28584094
Mouse	Bone marrow	Endothelial cell	Kdr, Pecam1, Ace, Cd44, Cdh5, Cldn5, Ctla2a, Egfl7, Emcn, Eng, Fabp4, Lrg1, Plvap, Procr, Tfpi, Thbd, Vwf	35643069, 34517413, 31921559
Mouse	Bone marrow	Endothelial cell of lymphatic vessel	Aqp1, Ccl21a, Cd9, Cldn5, Gng11, Ifitm3, Lyve1, Mmrn1, Selenop, Timp3	31353223
Mouse	Bone marrow	Eosinophil	Prg2, Atxn1, Cebpa, Cebpe, Etv6, Foxp1, Gfi1, Il5ra, Ly6a, Mpo, Pglyrp1, Siglecf, Spi1, Stat3	35984760, 30157427, 34930978, 31974159, 29915358, 26627738
Mouse	Bone marrow	Erythroblast	Gypa, Alas2, Bpgm, Hbb-b2, Hbb-bs, Klf1, Snca, Tfrc	30283141, 29474909, 35643069, 35984760
Mouse	Bone marrow	Erythrocyte	Car2, Hba-a2, Hba-a1, Car1, Hbb-bs, Gypa, Hbb-bt, Alas2, Bpgm, Gata1, Rhd, Tfrc, Alad, Aqp1, Blvrb, C1qtnf12, Cited4, Cpox, Ermap, Gata2, Gfi1b, Hemgn, Hspe1, Klf1, Mgst3, Phf10, Prdx2, Zfpm1	35195371, 35984760, 34930978, 34893625, 31439836, 32669716, 29915358, 26627738, 29466336
Mouse	Bone marrow	Erythroid progenitor cell	Ly76, Tfrc	21847081
Mouse	Bone marrow	Fat cell	Adipoq, Apoe, Cebpa, Lepr, Lpl, Pparg	32286228, 31949165
Mouse	Bone marrow	Fibroblast	Dcn, Fn1, S100a4, Col1a1, Col3a1, Gsn, Igfbp6, Mpz, Prg4, S100a6, Sema3c, Sparc, Tppp3	35195371, 35643069, 34893625, 33301706
Mouse	Bone marrow	Glial cell	S100a8, S100a9	33301706
Mouse	Bone marrow	Granule cell precursor	Elane, Gfi1, Mpo	34930978
Mouse	Bone marrow	Granulocyte	Ly6g, Ctsg, Itgam, Ms4a2, Calr, Camp, Ccl3, Cd177, Cd33, Cd48, Cd63, Cpa3, Elane, Fcer1a, Gata2, Gstm1, Lcn2, Lgals1, Ltf, Mcpt8, Mpo, Ngp, Pgam1, Pglyrp1, Plac8, Prss34, Prtn3	30283141, 35643069, 34893625, 31439836, 32669716, 23226623, 27984734
Mouse	Bone marrow	Granulocyte monocyte progenitor cell	Cd34, Kit, Ahnak, Cd68, Cdh1, Fcgr2b, Fcgr3, Flt3, Itgb2, Ly6a, Mpeg1, Pld4	30283141, 30157427, 33919312, 28584094
Mouse	Bone marrow	Helper T cell	Bcl2a1b, Ccr7, Cd2, Cd28, Cd3g, Cd40lg, Ctla4, Gimap3, Gm8369, Gramd3, Ifi27l2a, Klf2, Lef1, Ms4a4b, Ms4a6b, Pdcd4, Plac8, Rflnb, Rps27rt, S1pr1, Satb1, Smc4, Ssh2, Tnfrsf4, Tnfsf8, Tubb2a, Txk	31353223
Mouse	Bone marrow	Hematopoietic stem cell	Kit, Ly6a, Cd34, Cd48, Procr, Slamf1, Flt3, Ifitm1, Ptprc, Apoe, Atpif1, Car1, Cd19, Cd27, Cd3d, Cd3e, Cd3g, Cd4, Cd47, Cd8a, Cebpa, Cebpb, Cyld, Cyp26b1, Dusp1, Eef1g, Emcn, Fos, Gata2, Gnl3, Gprc5c, H2ac23, H2ac24, H3f3a, Ifitm3, Il7r, Itga2b, Itgal, Itgam, Klf2, Lmnb1, Lmo2, Ly6g, Ly76, Macroh2a1, Mif, Mllt3, Mpl, Mpo, Mycn, Neurl3, Nr4a1, Oaz1, Pf4, Prtn3, Rgs1, Rgs2, Rpl12, Rpl36a, Rps2, Rrm1, Slc22a3, Sox17, Tal1, Vim, Ybx1, Zfp36	29474909, 35195371, 35984760, 34930978, 34517413, 31921559, 34893625, 32421753, 33154494, 32669716, Company, 16314436, 28479188, 28790449, 27009448, 27984734, 27365425, 27225119, 28584094, 29543389
Mouse	Bone marrow	Immature B cell	Cd19, Cd79a, Cd79b, Chchd10, Mki67, Stmn1	30283141
Mouse	Bone marrow	Immature dendritic cell	Cd74, Cd86, Cst3, H2-Ab1, H2-Eb1	27984734
Mouse	Bone marrow	Inflammatory macrophage	Cd38, Cd86, Nos2	35862735, 30458295
Mouse	Bone marrow	Kupffer cell	Clec4f, Folr2, Vsig4	35276271
Mouse	Bone marrow	Long term hematopoietic stem cell	Cish, Esam, F11r, Mmrn1, Procr, Scarf1, Tgm2, Tie1, Tinagl1, Trpc6	34930978, 33919312, 27365425
Mouse	Bone marrow	Lymphoid lineage restricted progenitor cell	Cd79a, Ebf1, Il7r, Vpreb1	33077975, 33919312
Mouse	Bone marrow	Macrophage	Adgre1, Itgam, Mrc1, C1qa, C1qb, Ccr2, Cd68, Fcgr1, Fcgr3, MHC class II, S100a4, Ahnak, Anpep, Arg1, C1qc, Ccl6, Ccl9, Cd14, Cd163, Cd74, Cdh1, Cebpb, Crip1, Csf1r, F13a1, Fcer2a, Fn1, H2-DMa, Ifi27l2a, Ifitm3, Irf5, Irf8, Lgals3, Ly6d, Lyz2, Mpeg1, Ms4a6c, Npc2, Pdcd1lg2, Psap, Tyrobp, Wfdc17	30283141, 29474909, 35195371, 35984760, 34930978, 31921559, 34893625, 35031770, 32421753, 24169290, 20625006, 27788572, 24470386, 22674393, 18178715, 12511413, 11694622, 9103234, 3973536, 7276827, 29915358, 30458295
Mouse	Bone marrow	Mast cell	Fcer1a, Kit, Cd34, Cpa3, Adgre1, Alox5, Anpep, Arnt, Ccr2, Ccr3, Ccr4, Cd14, Cd19, Cd1d1, Cd24a, Cd33, Cd38, Cd40, Cd40lg, Cd44, Cd53, Cd68, Cd69, Cd80, Cd84, Cd86, Cd9, Cd93, Cdh1, Cr2, Csf1r, Cx3cr1, Cxcr2, Enpp3, Fcer2a, Fcgr1, Fcgr3, Flt3, Gzmb, Ifitm1, Ifngr1, Ikzf2, Il18r1, Il1r1, Il1r2, Il2rb, Il3ra, Il6ra, Il7r, Itga2, Itga2b, Itgam, Itgax, Lmo4, Ly6a, Ly6c1, Ly6e, Ly6g, Mrc1, Nos2, Pdcd1lg2, Pecam1, Plaur, Ptgdr2, Ptprc, Rbis, Sell, Siglecf, Spn, Srgn, Thbd, Thy1, Tlr2, Tlr4, Tnfrsf18	29474909, 34930978, 31974159, Company, 23850674, 12384153, 29466336
Mouse	Bone marrow	Mature monocyte	Adgre1, Ahnak, Cd68, Mpeg1	30283141
Mouse	Bone marrow	Megakaryocyte	Itga2b, Pf4, Mef2c, Pbx1, Fli1, Gata2, Itgb3, Meis1, Vwf, Cavin2, Cd41, Cited2, Cxcr4, Etv6, Foxp1, Gp5, Gp9, Itga6, Mpl, Ppbp, Runx1, Stat3, Zfpm1	34930978, 34893625, 31974159, 33079726, 35904250, 15001470, 29915358, 26627738, 29466336
Mouse	Bone marrow	Megakaryocyte progenitor cell	Cd9, Itga2b, Pbx1, Pf4, Plek, Rap1b, Tmsb4x	32669716
Mouse	Bone marrow	Megakaryocyte-erythroid progenitor cell	Cd34, Kit, Ly6a, Abcg4, Add2, Col5a1, Hba-a1, Klf1, Paqr9, Pklr, Prss50, Slamf1, Smim1, Snca, Sptb, Tgm2, Treml1	30283141, 33919312, 27365425, 28584094
Mouse	Bone marrow	Memory T cell	Bcl2, Cd2, Cd27, Cd3e, Cd3g, Cd7, Gimap1, Gimap3, Gimap4, Icos, Lck, Lef1, Ms4a4b, Nkg7, Ptprcap, Skap1	35984760
Mouse	Bone marrow	Mesenchymal cell	Anpep, Cd14, Cd34, Cd44, Cd79a, Cxcl12, Itgal, Itgb1, Itgb2, Kitl, Lepr, MHC class I, MHC class II, Ptprc, Thy1	34893625, 21196039
Mouse	Bone marrow	Mesenchymal stem cell	Cd44, Itgb1, Ly6a, Thy1, Ptprc, Grem1, Nt5e, Pdgfra, Adipoq, Agt, Angpt1, B4galnt1, Cd34, Cxcl12, Cxcl14, Eng, Esm1, Gli1, Hp, Il1rn, Itgam, Kitl, Lepr, Lpl, Ly76, Ptx3, Serping1, Vcam1	35643069, 31809738, 33301706, 24107641, 28537524, 28921810, 23766770, 22781302, 28701182, 22889498, 17939119, 28846679, 28189639, 26781600, 26303631, 30864680, 30377104
Mouse	Bone marrow	Monocyte	Csf1r, F13a1, Itgam, Ccr2, Clec4a3, Ctss, Ly6c2, Ly86, Adgre1, Birc5, Camp, Car2, Ccl6, Ccnb2, Cd302, Cd48, Cd68, Cdc20, Cdkn3, Cebpb, Cenpa, Cited4, Cmpk2, Crip1, Ctsd, Cxcl1, Cxcl2, Cxcl3, Dhrs3, E2f4, Fcgr3, Fdps, Fn1, Gata1, Gata2, Gfi1b, Gm9733, Gngt2, Hba-a2, Hbb-bs, Hmgb3, Ifi204, Ifit1, Il1b, Il6, Klf1, Lcn2, Ly6c1, Ly6e, Ly6g, Lyz2, Mbd2, Mgst1, Mmp8, Mpeg1, Ms4a6c, Ngp, Phb2, Phf10, Ptgs2, S100a9, Sirpb1c, Slpi, Tcf3, Tmcc1, Tnf, Uba52, Zfpm1	30283141, 29474909, 30157427, 34930978, 31921559, 35862735, 34893625, 31974159, 32421753, 35904250, 33154494, 31439836, 31076404, 23226623, 25852821, 29915358, 26627738, 27984734, 29466336
Mouse	Bone marrow	Myeloid lineage restricted progenitor cell	Cebpe, Elane, Ms4a3, Prtn3, Serpinb1a	35904250
Mouse	Bone marrow	Myofibroblast cell	Limch1, Acta1, Ccn5, Gas7, Igfbp7	33301706
Mouse	Bone marrow	Naive B cell	Cd19, Cd74, Cd79a, Cd79b, Ms4a1	30283141
Mouse	Bone marrow	Natural killer cell	Ccl5, Gzma, Klrb1c, Klrk1, Cd3g, Cd7, Klrb1b, Klre1, Ncr1, Serpinb9, Xcl1, Cd2, Cd3d, Cd3e, CD56, Cd74, Cebpa, Ctsw, Etv6, Fcer1g, Fcgr3, Foxp1, Il18r1, Il2rb, Itgax, Klra4, Klrb1a, Klrd1, Mpo, Nkg7, Samd3, Spi1, Stat3, Txk, Tyrobp	30283141, 35984760, 34930978, 31353223, 32421753, 33154494, 32406817, 26627738, 27984734, 30860401
Mouse	Bone marrow	Neutrophil	Ly6g, S100a9, S100a8, Lcn2, Ltf, Cd177, Retnlg, Camp, Mmp8, Anxa1, Cebpe, Chil3, Fcnb, Ifitm6, Mmp9, Ngp, Wfdc21, AA467197, Adpgk, Csf3r, Cxcr2, Elane, Gstm1, Hp, Itgam, Itgb2l, Lrg1, Mpo, Prtn3, Trem3, Adgre1, Birc5, C5ar1, Ccl6, Ccr1, Cd34, Cebpa, Ctsg, Eef1a1, Etv6, Foxp1, Gfi1, H2ax, H2az1, Hmgn2, Il1b, Il1r2, Il9, Lyz2, Mrgpra2b, Ms4a3, Ncf1, Pglyrp1, Pilra, Prr13, Rpl12, Rpl26, Rpl32, Rplp1, S100a11, S100a6, Slpi, Spi1, Stat3	29474909, 35195371, 35984760, 30157427, 34930978, 33549126, 34893625, 31974159, 35031770, 32421753, 35904250, 32719519, 11591793, 29915358, 26627738, 29466336, 29503441
Mouse	Bone marrow	Osteoblast	Bglap, Bglap2, Runx2, Spp1	34893625, 33301706
Mouse	Bone marrow	Pericyte	Acta2, Gm13889, H2-M9, Myh11, Myl9, Ndufa4l2, Rgs5, Sncg, Tagln, Tpm2	35643069
Mouse	Bone marrow	Plasma cell	Jchain, Sdc1, Cd37, Cd79a, Cycs, H2ac8, Mzb1, Prdm1, Slamf7, Tnfrsf13b, Tnfrsf17	35195371, 35984760, 34930978, 34727578, 19716372
Mouse	Bone marrow	Plasmacytoid dendritic cell	Bcl11a, Bst2, Ccr9, Irf8, Klk1, Klra17, Pacsin1, Siglech, Spib, Tcf4	35984760, 32421753, 29915358
Mouse	Bone marrow	Pre-conventional dendritic cell	Cd74, Cst3, H2-Aa, H2-Ab1, H2-DMb1, H2-Eb1, Irf8	32669716
Mouse	Bone marrow	Pre-osteoblast	Alpl, Postn	31949165
Mouse	Bone marrow	Precursor B cell	Igll1, Vpreb1, Cd79a, Dntt, Ebf1, Ighm, Vpreb3	35984760, 32669716
Mouse	Bone marrow	Preosteoblast	Cd3d, Cd3e, Cd3g, Csf1r, Grem1, Itgam, Kit, Mmp13, Ptprc, Sp7	34893625, 16355275
Mouse	Bone marrow	Pro-B cell	Bst1, Dntt, Gfra2, Rag1, Rag2	30283141, 29474909, 29899037
Mouse	Bone marrow	Proerythroblast	Hbb-b2, Hbb-bs, Mki67, Stmn1, Tfrc	30283141
Mouse	Bone marrow	Progenitor cell	Cd34, Cd48, Flt3, Kit, Ly6a, Slamf1	27365425
Mouse	Bone marrow	Proliferating fibroblast	Col1a1, Dcn, Mki67, Sparc, Stmn1, Top2a	35195371
Mouse	Bone marrow	Proliferating granulocyte	Camp, Lcn2, Ltf, Mki67, Pglyrp1, Stmn1	30283141
Mouse	Bone marrow	Proliferating promonocyte	Ahnak, Mki67, Mpeg1, Stmn1	30283141
Mouse	Bone marrow	Regulatory B cell	Apoe, Ccdc28b, Ccnd2, Ccr1, Cd300lf, Cd9, Csf2rb, Fcrl5, Mzb1, Pdia4, Plac8, Ptpn22, Rilpl2, Rplp0, S100a6, Slc7a7, Sp140, Stmn1, Zbtb20	34594327
Mouse	Bone marrow	Schwann cell	S100b	33301706
Mouse	Bone marrow	Smooth muscle cell	Acta2, Myh11	34893625
Mouse	Bone marrow	Stem cell	Cd34	31439836
Mouse	Bone marrow	T cell	Cd3e, Cd3g, Cd2, Cd5, Cd8a, Gzma, Ms4a4b, Ahnak, AW112010, Bcl2, Ccl5, Cd3d, Cd4, Cd7, Cd8b1, Gimap4, Id2, Klrd1, Lck, Nkg7, Ptprcap, Shisa5, Skap1, Thy1, Trbc1, Trbc2	30283141, 29474909, 35195371, 35643069, 35984760, 34930978, 34893625, 35904250, 16543069
Mouse	Bone marrow	White fat cell	Lep	32286228